SeqSphere+ can be used to download FASTQ files from SRA using the following accession numbers (NCBI, EMBL-EBI, DDBJ):
- SRA Run Accession (
SRR.., ERR..., DRR...) - SRA Sample Accession (
SRS.., ERS..., DRS...) - SRA Experiment Accession (
SRX.., ERX..., DRX...) - SRA Study Accession (
SRP.., ERP..., DRP...) - BioSample Accession (
SAM...) - BioProject Accession (
PRJ...)
If one or more accession numbers are given, the meta data for each run that is found in this context is retrieved. The result is shown in a table. If a single run accession was given, only this run is listed. If a study accession was given, all runs of this study are listed.
Three steps are necessary to import and analyse the genomes from an SRA study in your database:
- Step 1: Import Epi Data
- Press the the button
Import Epi Data to import the epi data (e.g. country) of the selected runs as Samples in a specified Project.
- Step 2: Download FASTQ Files
- Press OK to dowload the FASTQ files for the selected runs into a specified directory.
- Step 3: Import FASTQ with a SeqSphere+ Pipeline
- Define and start a Pipeline for the FASTQ files and the Project chosen above.