The Task Template Sphere can be used to rapidly and easily download freely available Task Templates for a specific organism. Users of a downloaded Task Template can contribute to a single world-wide expanding publicly available database of nomenclature and epidemiological data.
The following schemes are currently public available:
| Organism | Gene Count | Seed Genome | Publication |
|---|---|---|---|
| Acinetobacter baumannii | 2,390 | ACICU, NC_010611.1 | PLoS One 12: 2017 |
| Brucella melitensis | 2,704 | 16M, NC_003317.1 | JCM 56: 2018 |
| Campylobacter jejuni/coli | 637 | NCTC 11168, NC_002163.1 | - |
| Clostridioides difficile | 2,270 | 630, NC_009089.1 | JCM 56: 2018 |
| Enterococcus faecalis | 1,972 | OG1RF, NC_017316 | JCM 57: 2019 |
| Enterococcus faecium | 1,423 | Aus0004, NC_017022 | JCM 53: 2015 |
| Escherichia coli | 2,513 | Uses exactly the same loci and reference gene sequences as the EnteroBase Escherichia/Shigella cgMLST scheme. | |
| STEC | 3,152 | Sakai, NC_002695 | - |
| Francisella tularensis | 1,147 | LVS, NC_007880 | PLoS One 10: 2015 |
| Klebsiella pneumoniae sensu lato | 2,358 | NTUH-K2044, NC_012731.1 | - |
| Legionella pneumophila | 1,521 | Philadelphia 1, NC_002942 | Eurosurveillance 20: 2015 |
| Listeria monocytogenes | 1,701 | EGD-e, NC_003210 | CMI 20: 2014 |
| Mycobacterium tuberculosis complex | 2,891 | H37Rv, NC_000962.3 | JCM 52: 2014 |
| Mycoplasma gallisepticum | 425 | R(low), NC_004829.2 | JCM 56: 2017 |
| Neisseria meningitidis | 1,241 | FAM18, NC_008767.1 | - |
| Salmonella enterica | 3,002 | Uses exactly the same loci and reference gene sequences as the EnteroBase S. enterica cgMLST v2 scheme. | |
| Staphylococcus aureus | 1,861 | COL, NC_002951.2 | JCM 52: 2014 |
If an organism cannot be found in the list above, see how to analyse organisms without public cgMLST scheme.