Changes in Version 8.3

Major Changes

• New functionality to import an existing StaphType database
• New early warning alert and search for similar samples for spa-typing task template
• Updated noteable missense variants for SARS-CoV-2 all ORFs task template (v1.5, task template update can be downloaded in SeqSphere)

Minor Changes

• Numeric sorting in comparison table and MST legend of ST, CT, spa-types, etc.
• Improved report of updated MLST results after updating MLST task templates
• Updated pangolin task template (v1.2) fields to store additional version info (task template update can be downloaded in SeqSphere)
• Added SARS-Cov-2 ARTIC v4 bed file
• Added SARS-Cov-2 for Nimagen kit autocorrection of wrong read mapping at del 60-70 for Omicron variant
• Exclude spa-types with less than 5 repeats from distance calculation (according to original BURP publication)
• Added date format check of values before starting epi metadata import
• Fixed issue with Newick file export of MST clusers
• Fixed issue with Sample report introduced with version 8.2
• Modified Linux start script to support symbolic links

For older versions see complete version history.