Please Note: Working with Plasmid Databases requires the Long Read Data Analysis Module
The function Search Similar Plasmids in Mash Database allows to search a Mash databases by the dna-sequence of a plasmid. Matching plasmids in the selected database up the given distance thresholds are displayed in a plasmid table. The query plasmid sequences are fetched from the Sample attachment.
All available Mash databases for each Task Entry of the Sample are listed in the drop box and can be selected for search. Mash databases that do not contain the selected plasmid are displayed in orange.
The distance settings for similarity search can be changed.
Important:
- If SeqSphere+ is installed on Windows, pyGenomeViz requires the Windows Subsystem for Linux (WSL).
- If SeqSphere+ is installed on Linux, pyGenomeViz must once be installed by calling the installation of Bioinformatic Tools on Linux.