Management of Pipeline Reports

Each pipeline run produces one report. The pipeline reports are stored on the server and are accessible for the group that was defined in the pipeline script.

To view and manage the reports use the normal login mode of SeqSphere+ client and use the menu item Button16 PipelineReport.png Tools | Browse Pipeline Reports

A table of all visible pipeline reports is shown. Pipeline reports are periodically delivered by the pipeline, therefore you may also see reports of running pipelines in this table. Use the Button16-Refresh.gif Reload Reports button to update the table.

Double-click or use the Button16-View.png View Report button to open a pipeline report.

Browse Pipeline Reports
Screenshot of a pipeline technical report view.

Pipeline Report Chapters


Shows a summary of the pipeline results. The summary also shows if a Cluster Alert has occurred. This means that at least two Samples were found that have equal or more identical cgMLST than defined as Cluster Alert distance threshold in the Task Procedure settings of the Task Template. For this comparison each newly imported Sample is compared against all Samples that currently exist in the database and using the same cgMLST scheme, even in other Projects.

Pipeline Report Overview

Processed Samples

Showing all Samples that were processed, even if they failed and were not imported. Double-click or use the Button16-DBLoad.png Open Samples button to open one or more Samples.

Pipeline Report Processed Samples

Log Messages

All log messages that were reported while the pipeline was running. The log messages for each Sample are also added to the Sample and are shown in the Procedure tab of the Sample Overview

Pipeline Report Log Messages


Shows an overview of the pipeline script and allows to export the script. The export is useful if you want to transfer a script to another SeqSphere+ client computer to run it concurrently for scaling up.

Pipeline Report Pipeline Script