Memory Usage
Configure the maximum of memory (RAM) that can be used by SeqSphere+. On 32bit operating systems this maximum is limited to around 1.3 GB. On 64bit systems it is only limited by your physical available memory.
PDF Viewer (Linux version only)
If your standard PDF Viewer is not found automatically it can be specified here.

Comparison Table

Distance Calculation
Allows to hide the warning dialog for columns with empty values
Allows to disable the highlighting of empty values

DNA Sequence Views

Contig Alignment
You can specify if the visible layout of the aligned read rows when scrolling through the contig alignment.
Sequence Editor
You can specify the color schemes visible layouts for the sequence and chromatogram editors
Read Import
You can specify if the name of a read should be take from the file name, or from an internal comment

Online Connection

Proxy Server
The Proxy settings must be specified here if your need to go through a HTTP Proxy to access the Internet.
Online Updates
You can specify if SeqSphere+ should search for updates on every startup.
Sample Submission
You can specify the Submission Anonymization Filter to define what level of place/time and sample ID should submitted to public databases.

Input Files

Reads with a mapping quality below the given threshold (default 10) are discared when Samples are created from SAM/BAM files using Process Assembled Genome Data or the Pipeline Mode.