Changes in Version 12.0

Major Changes

• New M. tuberculosis TB-Profiler AMR task template added.
• New GAMBIT Bacterial Species ID task template added.
• New CheckM2 Intra-species Contamination Check task template added.
• New support for NCBI Datasets API in NCBI Genomes function to download the latest genome entries and support GCF/GCA numbers.
• Former Long Read Module is now integrated in the regular license (if license is ordered after April 1st 2026) containing the Long Read Assembly with proprietary ONT-cgMLST-Polisher and Long Read Plasmid Transmission functionality. The Long Read Assembly now also supports PacBio FASTQs with the Flye assembler.

Minor Changes

• Updated WSL image to Ubuntu 24.04 LTS.
• Added possibility that a once downloaded WSL image can be imported from a file for quicker updating WSL of multiple MBioSEQ Ridom Typer Clients.
• Added a notice to the welcome screen indicating whether long read functionality is licensed.
• Added copy contigs to clipboard function for plasmid tables to search plasmids at NCBI and PLSDB.
• Added support for MiSeq i100 run folders and run info.
• Added last login for each user to the Access Logging.
• Added a checkbox in pipeline progress dialog to exit the client after the pipeline finishes to free RAM immediatly.
• Added a tools menu function to convert PacBio or re-basecalled ONT raw reads from BAM into FASTQ files.

• Updated pipeline setting when filling Genus/Species fields from species ID that are used for ENA submissions.
• Fixed a date issue error that occured when the MBioSEQ Ridom Typer Server was in a different time zone than Clients.
• Fixed an error when accessing Providencia spp. PubMLST without account.
• Some further small improvements and bug fixes.

For older versions see complete version history.