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General
- Memory Usage
- Configure the maximum of memory (RAM) that can be used by SeqSphere+. On 32bit operating systems this maximum is limited to around 1.3 GB. On 64bit systems it is only limited by your physical available memory.
- PDF Viewer (Linux version only)
- If your standard PDF Viewer is not found automatically it can be specified here.
Comparison Table
- Distance Calculation
- Allows to hide the warning dialog for columns with empty values
- Highlight
- Allows to disable the highlighting of empty values
DNA Sequence Views
- Contig Alignment
- You can specify if the visible layout of the aligned read rows when scrolling through the contig alignment.
- Sequence Editor
- You can specify the color schemes visible layouts for the sequence and chromatogram editors
- Read Import
- You can specify if the name of a read should be take from the file name, or from an internal comment
Online Connection
- Proxy Server
- If your need to go through a HTTP Proxy to access the Internet, it must be specified here.
- Online Updates
- You can specify if SeqSphere+ should search for updates on every startup.
Input Files
- SAM/BAM
- Reads with a mapping quality below the given threshold (default 10) are discared when Samples are created from SAM/BAM files using Create Samples from Assembled Genomes or the Pipeline Mode.
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